Technical aspects of single molecule force spectroscopy

Boris Akhremitchev research

Overview

Force spectroscopy provides information about energy landscape of interacting measures by pulling interacting molecules apart, one by one. These molecules are usually chemically grafted to the substrate and the probe. Probe is repeatedly brought to the surface and withdrawn. Sometimes molecules on the probe will bind molecules at the surface. This binding "hitches" probe motion and can be detected by measuring deflection of the flexible cantilever spring. We can not control which molecules will preferentially bind together. Due to possible deficiencies in the sample preparation procedure, these might be not the molecules that are intended to study. One of the most important aspects in force spectroscopy is to ensure that measured pull forces correspond to proper molecules. This requires careful sample preparation as well as conducting test experiments. These and other important aspects of force spectroscopy experiments are described in the sections listed below.

Information presented here is based on our research that uses force spectroscopy as a major research tool. For more information see our articles that describe studies of interactions between single alpha-synuclein fragments (published in JACS), single-molecule studies of hydrophobic forces between individual hexadecane molecules (published in JPC-B and Langmuir) and studies of pairwise interactions between fullerene molecules (published in JPC-C). Our recent article [6] describes the model that can be used to account for two-bond ruptures that might occur in force-spectroscopy measurements and add a tail of high forces in the probability distribution of measured rupture forces.
[1] Ray, C. and Akhremitchev, B. B. "Conformational Heterogeneity of Surface-Grafted Amyloidogenic Fragments of Alpha-Synuclein Dimers Detected by Atomic Force Microscopy" J. Am. Chem. Soc. 2005, 127 (42), 14739 - 14744.
[2] Ray, C.; Brown, J.R. and Akhremitchev, B. B. "Single-molecule Force Spectroscopy Measurements of "Hydrophobic Bond" between Tethered Hexadecane Molecules" J. Phys. Chem. B 2006, 110 (35), 17578 - 17583.
[3] Ray, C.; Brown, J.R. and Akhremitchev, B. B. "Correction of Systematic Errors in Single-Molecule Force Spectroscopy with Polymeric Tethers by Atomic Force Microscopy" J. Phys. Chem. B 2007, 111 (8) pp 1963 - 1974.
[4] Ray, C.; Brown, J.R. and Akhremitchev, B. B. "Rupture force analysis and the associated systematic errors in force spectroscopy by AFM" Langmuir 2007 , 23 (11) pp 6076-6083.
[5] Gu, C.; Ray, C; Guo, S.; Akhremitchev, B. B. "Single-Molecule Force Spectroscopy Measurements of Interactions between C60 Fullerene Molecules" J. Phys. Chem. C 2007 , 111 (35), 12898-12905.
[6] Gu, C.; Kirkpatrick, A.; Ray, C; Guo, S.; Akhremitchev, B. B. "Effects of Multiple Bonds Rupture in Force Spectroscopy Measurements of Interactions between Fullerene C60 Molecules in Water" J. Phys. Chem. C 2008, 112 (13), 5085 -5092.

Here are two references on the general aspects of force spectroscopy:
[7] Janshoff, A.; Neitzert, M.; Oberdorfer, Y.; Fuchs, H. "Force spectroscopy of molecular systems" Angew. Chem.-Int. Edit. 2000, 39, 3213-3237.
[8] Hugel, T.; Seitz, M. “The Study of Molecular Interactions by AFM Force SpectroscopyMacromol. Rapid Commun. 2001, 22, 989-1016.
A review article on using AFM in biophysics:
[9] Alessandrini, A.; Facci, P, "AFM: a versatile tool in biophysics" Meas. Sci. Technol. 2005, 16, R65-R92.

Sample preparation

AFM force spectroscopy experiments

Data processing

This work is in part supported by NSF under award CHE-0719043.

Last Modified on January 25, 2008

E-mail boris.a@duke.edu